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Techy Cutie Pony Collection!

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Description

series off the top of my head by them:  
Godzilla  
Transformers  
G. I. Joe  
Angel  
True Blood  
Dungeons and Dragons  
Star Trek  
Doctor Who  
Locke and Key  
30 Days of Nights  
Jurassic Park  
Tank Girl  
Teenage Mutant Ninja Turtles  
Eternal Decent  
Magic the Gathering  
Mars Attack  
Silent Hill  
Jericho  
Ghostbusters  
Popeye the Sailorman

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Background Pony #5219
I can imagine Pinkie singing giggle at the ghostlies to the Ghostbusters. So I’d say that or Doctor Who.
Elesh Norn
The End wasn't The End - Found a new home after the great exodus of 2012

Ninja Turtles.
 
The old Eastman-Laird issues did weird and inexplicable stuff every now and then. Ponies really wouldn’t be that odd.
Beau Skunky
Friendship, Art, and Magic (2019) - Celebrated Derpibooru's seventh year anniversary with friends
Cool Crow - "Caw!" An awesome tagger
Magnificent Metadata Maniac - #1 Assistant
Artist -

Professional supermodel
Probably Popeye, it could be funny.
 
As for a crossover with a comic by a different comic company, how about the “Sonic the Hedgehog” comic? :P (He is doing a crossover with Megaman in a few months.)
Background Pony #2631
Regular Show, that show with the weird water worm thing, Fanboy and Chum Chum, and every other cartoon. And there must be shipping between every character.
Sr Pelusa
Magnificent Metadata Maniac - #1 Assistant
Perfect Pony Plot Provider - Uploader of 10+ images with 350 upvotes or more (Questionable/Explicit)
Fine Arts - Two hundred uploads with a score of over a hundred (Safe/Suggestive)

Human Mane 6 in G.I.Joe: COBRA attacks the nation of Equestria, so Duke sends Scarlet to start a Joe team.
 
Oh maybe, just have the fillies, the Joes have been in stranger odds:
 
Lovecraftian monster, Lost Reptilian civilizations and Egyptian Gods.
Background Pony #A2DA
Well Jurassic Park could be good, well more of a “Ponies are stuck in the past” plot would be cool
Retl
Lunar Supporter - Helped forge New Lunar Republic's freedom in the face of the Solar Empire's oppressive tyrannical regime (April Fools 2023).
Bronze Bit -
Emerald -
Happy Derpy! -
Bronze Supporter -
Artist -
The End wasn't The End - Found a new home after the great exodus of 2012

Transformers and FiM crossing over kinda makes sense. But to be frank, out of those options? I’d rather no crossover at all.
Background Pony #166B
Transformers would probably be the most likely crossover, being another Hasbro property and they can avoid “Humans in Equestria”.
 
Then again, IDW is doing Mars Attacks KISS. Yes, the band KISS. IDW can make anything work.